{
  "_id": "6a1d542b1d7bb097a0a464e3",
  "URL": "https://sima-njf.github.io/epiworldRcalibrate/,\nhttps://github.com/sima-njf/epiworldRcalibrate",
  "BugReports": "https://github.com/sima-njf/epiworldRcalibrate/issues",
  "Package": "epiworldRcalibrate",
  "Title": "Fast and Effortless Calibration of Agent-Based Models using\nMachine Learning",
  "Version": "0.1.3",
  "Authors@R": "c(\nperson(\n\"Sima\", \"Najafzadehkhoei\", role=c(\"aut\",\"cre\"), email=\"sima.njf@utah.edu\",\ncomment = c(ORCID = \"0009-0002-6253-2910\")\n),\nperson(\n\"George\", \"Vega Yon\", role=c(\"aut\"), email=\"g.vegayon@gmail.com\",\ncomment = c(ORCID = \"0000-0002-3171-0844\")\n),\nperson(\n\"Jake\", \"Wagoner\", role=c(\"aut\"), email=\"jakew@sci.utah.edu\"\n),\nperson(\n\"Bernardo\", \"Modenesi\", role=c(\"aut\"), email=\"bmodenesi@gmail.com\"\n),\nperson(\"Centers for Disease Control and Prevention\", role = \"fnd\",\ncomment = \"Award number 1U01CK000585; 75D30121F00003\")\n)",
  "Description": "Provides tools and pre-trained Machine Learning [ML]\nmodels for calibration of Agent-Based Models [ABMs] built with\nthe R package 'epiworldR'. Implements methods described in\nNajafzadehkhoei, Vega Yon, Modenesi, and Meyer (2025)\n<doi:10.48550/arXiv.2509.07013>. Users can automatically\ncalibrate ABMs in seconds with pre-trained ML models,\neffectively focusing on simulation rather than calibration.\nBridges a gap by allowing public health practitioners to run\ntheir own ABMs without the advanced technical expertise often\nrequired by calibration.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/testthat/edition": "3",
  "LazyData": "true",
  "Config/pak/sysreqs": "libpng-dev python3",
  "Repository": "https://sima-njf.r-universe.dev",
  "Date/Publication": "2026-04-02 18:03:27 UTC",
  "RemoteUrl": "https://github.com/sima-njf/epiworldrcalibrate",
  "RemoteRef": "HEAD",
  "RemoteSha": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-01 09:40:10 UTC",
    "User": "root"
  },
  "Author": "Sima Najafzadehkhoei [aut, cre] (ORCID:\n<https://orcid.org/0009-0002-6253-2910>),\nGeorge Vega Yon [aut] (ORCID: <https://orcid.org/0000-0002-3171-0844>),\nJake Wagoner [aut],\nBernardo Modenesi [aut],\nCenters for Disease Control and Prevention [fnd] (Award number\n1U01CK000585; 75D30121F00003)",
  "Maintainer": "Sima Najafzadehkhoei <sima.njf@utah.edu>",
  "MD5sum": "d8be26fa7e9f5bb01533b74b23786881",
  "_user": "sima-njf",
  "_type": "src",
  "_file": "epiworldRcalibrate_0.1.3.tar.gz",
  "_fileid": "d378f4d13a1f04e5c5044880d90fcf72c0abdd0996e5e9947763d246e3f08aea",
  "_filesize": 5574201,
  "_sha256": "d378f4d13a1f04e5c5044880d90fcf72c0abdd0996e5e9947763d246e3f08aea",
  "_created": "2026-06-01T09:40:10.000Z",
  "_published": "2026-06-01T09:43:07.059Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78825646878,
      "time": 125,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7328205062"
    },
    {
      "job": 78825646846,
      "time": 133,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7328207691"
    },
    {
      "job": 78825646886,
      "time": 143,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7328202320"
    },
    {
      "job": 78825646871,
      "time": 134,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7328200879"
    },
    {
      "job": 78825191840,
      "time": 158,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7328164534"
    },
    {
      "job": 78825646829,
      "time": 105,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7328199228"
    },
    {
      "job": 78825646868,
      "time": 86,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7328192903"
    },
    {
      "job": 78825646866,
      "time": 92,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7328194323"
    },
    {
      "job": 78825646928,
      "time": 83,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7328191943"
    }
  ],
  "_buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/sima-njf/epiworldrcalibrate",
  "_commit": {
    "id": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
    "author": "Sima Najafzadehkhoei <u1418987@umail.utah.edu>",
    "committer": "Sima Najafzadehkhoei <u1418987@umail.utah.edu>",
    "message": "change the R version\n",
    "time": 1775153007
  },
  "_maintainer": {
    "name": "Sima Najafzadehkhoei",
    "email": "sima.njf@utah.edu"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "reticulate",
      "version": ">= 1.41",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "epiworldR",
      "role": "Suggests"
    }
  ],
  "_owner": "sima-njf",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 4
    },
    {
      "week": "2025-35",
      "n": 10
    },
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 6
    },
    {
      "week": "2025-40",
      "n": 18
    },
    {
      "week": "2025-47",
      "n": 17
    },
    {
      "week": "2025-50",
      "n": 45
    },
    {
      "week": "2026-03",
      "n": 2
    },
    {
      "week": "2026-05",
      "n": 19
    },
    {
      "week": "2026-06",
      "n": 1
    },
    {
      "week": "2026-07",
      "n": 3
    },
    {
      "week": "2026-14",
      "n": 6
    }
  ],
  "_tags": [],
  "_topics": [
    "agent-based-model",
    "epidemiology",
    "epiworldr-calibration-simulation",
    "infectious-disease-modeling"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "sima-njf",
      "count": 127,
      "uuid": 152537705
    },
    {
      "user": "jakewags",
      "count": 4,
      "uuid": 35744963
    },
    {
      "user": "gvegayon",
      "count": 3,
      "uuid": 893619
    },
    {
      "user": "copilot",
      "count": 1,
      "uuid": 198982749
    }
  ],
  "_userbio": {
    "uuid": 152537705,
    "type": "user",
    "name": "sima "
  },
  "_downloads": {
    "count": 148,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/epiworldRcalibrate"
  },
  "_devurl": "https://github.com/sima-njf/epiworldrcalibrate",
  "_pkgdown": "https://sima-njf.github.io/epiworldRcalibrate/",
  "_searchresults": 11,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/epiworldRcalibrate.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sima-njf/epiworldrcalibrate",
  "_realowner": "sima-njf",
  "_cranurl": true,
  "_releases": [
    {
      "version": "0.1.2",
      "date": "2026-02-18"
    },
    {
      "version": "0.1.4",
      "date": "2026-04-02"
    }
  ],
  "_exports": [
    "calibrate_sir",
    "check_model_status",
    "check_python_setup",
    "cleanup_model",
    "estimate_sir_parameters",
    "init_bilstm_model",
    "setup_python_deps"
  ],
  "_datasets": [
    {
      "name": "abc_calibration_params",
      "title": "ABC calibration results for COVID-19 SIR model",
      "object": "abc_calibration_params",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "utah_covid_data",
      "title": "Utah COVID-19 epidemic trends",
      "object": "utah_covid_data",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Date",
        "Daily.Cases",
        "X3.Day.Moving.Average",
        "Smoothed.3.Day.Moving.Average",
        "Status"
      ],
      "rows": 365,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "abc_calibration_params",
      "title": "ABC calibration results for COVID-19 SIR model",
      "topics": [
        "abc_calibration_params"
      ]
    },
    {
      "page": "calibrate_sir",
      "title": "Calibrate SIR Parameters (one-step convenience wrapper)",
      "topics": [
        "calibrate_sir"
      ]
    },
    {
      "page": "check_model_status",
      "title": "Check model status",
      "topics": [
        "check_model_status"
      ]
    },
    {
      "page": "check_python_setup",
      "title": "Check Python and package installation status",
      "topics": [
        "check_python_setup"
      ]
    },
    {
      "page": "cleanup_model",
      "title": "Unload the model from memory",
      "topics": [
        "cleanup_model"
      ]
    },
    {
      "page": "estimate_sir_parameters",
      "title": "Estimate SIR Parameters from 61-day incidence",
      "topics": [
        "estimate_sir_parameters"
      ]
    },
    {
      "page": "init_bilstm_model",
      "title": "Initialize BiLSTM Model for SIR Parameter Estimation",
      "topics": [
        "init_bilstm_model"
      ]
    },
    {
      "page": "setup_python_deps",
      "title": "Set up Python dependencies for epiworldRcalibrate",
      "topics": [
        "setup_python_deps"
      ]
    },
    {
      "page": "utah_covid_data",
      "title": "Utah COVID-19 epidemic trends",
      "topics": [
        "utah_covid_data"
      ]
    }
  ],
  "_readme": "https://github.com/sima-njf/epiworldrcalibrate/raw/HEAD/README.md",
  "_rundeps": [
    "here",
    "jsonlite",
    "lattice",
    "Matrix",
    "png",
    "rappdirs",
    "Rcpp",
    "RcppTOML",
    "reticulate",
    "rlang",
    "rprojroot",
    "withr"
  ],
  "_score": 4.296665190261532,
  "_indexed": true,
  "_nocasepkg": "epiworldrcalibrate",
  "_universes": [
    "sima-njf"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.3",
      "date": "2026-06-01T09:42:10.000Z",
      "distro": "noble",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "85c31b7b5c56997f4e0d80f4aaf7e35e69d9475e601f392dea7c0e2051a40d98",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.3",
      "date": "2026-06-01T09:42:20.000Z",
      "distro": "noble",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "6efb61bc9610feb381e5e20c3b93e7ba2e5da4b91e616770218a71e78c770871",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.3",
      "date": "2026-06-01T09:42:10.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "fb13a43d19510390fdf5827cd2fc11ad6a0b7be1602db6601e91f3a3bdcbf127",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.3",
      "date": "2026-06-01T09:42:02.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "9a536cfa771f297ecd262015d4796d8448220dc84ebab854be38089f01107d01",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.3",
      "date": "2026-06-01T09:42:13.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "994efe2e8d5f5c0aca6bb08a95e151e948c3b74306b0b917b026075e331b1f1f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-06-01T09:41:29.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "49bcccfbba4a3effe9e35c4cc7d243d26b1ed898e55f9931cf58c72221ecb7b4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-06-01T09:41:28.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "dfc899ad34868c72a9290caaba3ae91e5547ab450b1d535295b3d1da2dcf4608",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.3",
      "date": "2026-06-01T09:41:24.000Z",
      "commit": "f8a39ce2cbda363fec0d8c10067c3baf45db3938",
      "fileid": "62134cf8c3cb1f7db0814f9a13c109a945935b1d5a4d3c43cbe19bdcedbf8611",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/sima-njf/actions/runs/26747056795"
    }
  ]
}